BLASTN 2.1.2 [Nov-13-2000] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= CRA|11000567083186 /trans_lig_id=CRA|341000000001293 /dataset=LTI_cDNA rndm_seq /def=asm|341000000001293.Contig6 /org=Homo sapiens /date=11/18/2000 /clone_id=CRA|19600411940083 /tissue=fetal_whole_brain (3442 letters) Database: /work/gdisc2/pipeline_runs/latest_release/CHGD_assembly_late st.fasta 479,986 sequences; 3,281,761,131 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value CRA|GA_x54KRCCNGEJ:1..2166028 /chromosome=13 /organism=Homo sap... 508 e-140 CRA|GA_x54KRE2F1CS:1..13238 /chromosome=U /organism=Homo sapien... 482 e-133 CRA|GA_x54KRCCNGAU:1..14052 /chromosome=U /organism=Homo sapien... 482 e-133 CRA|GA_x54KRDAVJLM:1..1095 /chromosome=U /organism=Homo sapiens... 126 9e-26 CRA|GA_x54KRDAVJLL:1..683 /chromosome=U /organism=Homo sapiens ... 126 9e-26 CRA|GA_x54KRDAVJLK:1..639 /chromosome=U /organism=Homo sapiens ... 126 9e-26 CRA|GA_x2HTBL2Y49L:1..2141229 /chromosome=6 /organism=Homo sapi... 126 9e-26 >CRA|GA_x54KRCCNGEJ:1..2166028 /chromosome=13 /organism=Homo sapiens /order=1 /ga_uid=181000001503698 /len=2166028 Length = 2166028 Score = 508 bits (254), Expect = e-140 Identities = 254/254 (100%) Strand = Plus / Minus Query: 1312 cagtctcagcagagcaccagccttacatttggagaaggtgccgaatctccagggggccag 1371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274529 cagtctcagcagagcaccagccttacatttggagaaggtgccgaatctccagggggccag 1274470 Query: 1372 agctgccggcgaggaaaggaaccgaaggtttccgccggggagccggggtcgcacccgagc 1431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274469 agctgccggcgaggaaaggaaccgaaggtttccgccggggagccggggtcgcacccgagc 1274410 Query: 1432 cctgcgccgaggagaagccccgcgggtaacaagcaggcggacggagccgcctcggcgccc 1491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274409 cctgcgccgaggagaagccccgcgggtaacaagcaggcggacggagccgcctcggcgccc 1274350 Query: 1492 acggaggaagaggaggaggtcgttaaggataggacccagcagagtaaacctcagcccccg 1551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274349 acggaggaagaggaggaggtcgttaaggataggacccagcagagtaaacctcagcccccg 1274290 Query: 1552 cagccaagcacagg 1565 |||||||||||||| Sbjct: 1274289 cagccaagcacagg 1274276 Score = 394 bits (197), Expect = e-106 Identities = 203/204 (99%) Strand = Plus / Minus Query: 3205 aggtggatggaagtgatccgcagtgccaccagctctgcctcgcgaccccacgtgttgagc 3264 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1224001 aggtggatggaagtgatccgcagtgccaccagctctgcctcgcgaccccacgtgttgagt 1223942 Query: 3265 cacaaagagtctcttgtgtattgatggccggacacactcgtttccgcagtggctgctttc 3324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1223941 cacaaagagtctcttgtgtattgatggccggacacactcgtttccgcagtggctgctttc 1223882 Query: 3325 ctggaagacgtttcctttcttctgtattaatgaagcctggtaaaattaacacctgtctga 3384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1223881 ctggaagacgtttcctttcttctgtattaatgaagcctggtaaaattaacacctgtctga 1223822 Query: 3385 aaatcaaaaacatggcttcccagc 3408 |||||||||||||||||||||||| Sbjct: 1223821 aaatcaaaaacatggcttcccagc 1223798 Score = 390 bits (195), Expect = e-105 Identities = 195/195 (100%) Strand = Plus / Minus Query: 127 gatattctctaagccgctttcatcatgggagaaatagagcagaggccgaccccaggatca 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456603 gatattctctaagccgctttcatcatgggagaaatagagcagaggccgaccccaggatca 1456544 Query: 187 cgactgggggccccggaaaattcggggatcagtaccttggaacgtggacagaagccgccc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456543 cgactgggggccccggaaaattcggggatcagtaccttggaacgtggacagaagccgccc 1456484 Query: 247 ccaacaccttcaggaaaactcgtgtccatcaaaatccagatgctggatgacacccaggag 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456483 ccaacaccttcaggaaaactcgtgtccatcaaaatccagatgctggatgacacccaggag 1456424 Query: 307 gcatttgaagttcca 321 ||||||||||||||| Sbjct: 1456423 gcatttgaagttcca 1456409 Score = 384 bits (192), Expect = e-103 Identities = 192/192 (100%) Strand = Plus / Minus Query: 1561 acaggctccctgactggcagtcctcacctttccgagctgtctgtgaactcgcagggggga 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1260410 acaggctccctgactggcagtcctcacctttccgagctgtctgtgaactcgcagggggga 1260351 Query: 1621 gtggcccctgccaacgtgaccttgtctcccaacctgagccccgacaccaagcaggcctct 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1260350 gtggcccctgccaacgtgaccttgtctcccaacctgagccccgacaccaagcaggcctct 1260291 Query: 1681 cccttgatcagcccgctgctgaatgaccaggcctgcccccggacggacgatgaggatgag 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1260290 cccttgatcagcccgctgctgaatgaccaggcctgcccccggacggacgatgaggatgag 1260231 Query: 1741 ggccggaggaag 1752 |||||||||||| Sbjct: 1260230 ggccggaggaag 1260219 Score = 328 bits (164), Expect = 1e-86 Identities = 164/164 (100%) Strand = Plus / Minus Query: 1006 agtgcgtaccaggataccttggaattcctgatggccagtcgggatttctgcaagtccttc 1065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1279797 agtgcgtaccaggataccttggaattcctgatggccagtcgggatttctgcaagtccttc 1279738 Query: 1066 tggaaaatctgtgttgaacatcatgccttctttagactttttgaagagcccaaaccaaag 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1279737 tggaaaatctgtgttgaacatcatgccttctttagactttttgaagagcccaaaccaaag 1279678 Query: 1126 cccaagcccgtcctctttagccgggggtcatcatttcggttcag 1169 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1279677 cccaagcccgtcctctttagccgggggtcatcatttcggttcag 1279634 Score = 320 bits (160), Expect = 4e-84 Identities = 167/168 (99%), Gaps = 1/168 (0%) Strand = Plus / Minus Query: 2780 agtcccctgatgaagccaccgcggctgaccaggagtcagaggatgacctgagcgcctcgc 2839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1231571 agtcccctgatgaagccaccgcggctgaccaggagtcagaggatgacctgagcgcctcgc 1231512 Query: 2840 gcacatcgctggagcgccaggccccgcaccgcggcaacacaatggtgcacgtgtgctggc 2899 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1231511 gcacatcgctggagcgccaggccccgcaccgcggcaacacaatggtgcacgtgtgctggc 1231452 Query: 2900 accgcaacaccagcgtctccatggtggacttcagca-tcgcagtggag 2946 |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1231451 accgcaacaccagcgtctccatggtggacttcagcattcgcagtggag 1231404 Score = 316 bits (158), Expect = 6e-83 Identities = 158/158 (100%) Strand = Plus / Minus Query: 3051 ccaggacaatcatccccttgccagcctgcctctgctcggctactcgctcaccatcccctc 3110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225573 ccaggacaatcatccccttgccagcctgcctctgctcggctactcgctcaccatcccctc 1225514 Query: 3111 tgagtccgagaacatccagaaagactacgtgttcaagctgcacttcaagtcccacgtcta 3170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225513 tgagtccgagaacatccagaaagactacgtgttcaagctgcacttcaagtcccacgtcta 1225454 Query: 3171 ctacttcagggcggaaagcgagtacacgttcgaaaggt 3208 |||||||||||||||||||||||||||||||||||||| Sbjct: 1225453 ctacttcagggcggaaagcgagtacacgttcgaaaggt 1225416 Score = 298 bits (149), Expect = 2e-77 Identities = 149/149 (100%) Strand = Plus / Minus Query: 762 tggacaaacaccagcagaatcagatttccagctcctagagattgcccgtcggctagagat 821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284087 tggacaaacaccagcagaatcagatttccagctcctagagattgcccgtcggctagagat 1284028 Query: 822 gtatggaatccggttgcacccggccaaggacagggaaggcacgaagatcaatctggccgt 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284027 gtatggaatccggttgcacccggccaaggacagggaaggcacgaagatcaatctggccgt 1283968 Query: 882 tgccaacacgggaattctagtgtttcagg 910 ||||||||||||||||||||||||||||| Sbjct: 1283967 tgccaacacgggaattctagtgtttcagg 1283939 Score = 272 bits (136), Expect = 1e-69 Identities = 136/136 (100%) Strand = Plus / Minus Query: 1842 gtggtttcagagcacagtgagcaaagaggacgccatgccggaagcactgaaaagtctcat 1901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257844 gtggtttcagagcacagtgagcaaagaggacgccatgccggaagcactgaaaagtctcat 1257785 Query: 1902 attcccgaattttgaacctttgcacaaatttcatactaattttctcaaggaaattgagca 1961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257784 attcccgaattttgaacctttgcacaaatttcatactaattttctcaaggaaattgagca 1257725 Query: 1962 acgacttgccctgtgg 1977 |||||||||||||||| Sbjct: 1257724 acgacttgccctgtgg 1257709 Score = 268 bits (134), Expect = 2e-68 Identities = 134/134 (100%) Strand = Plus / Minus Query: 2292 agccgctttggcagagatcacggagatggtggcacagctccacggtacgatgatcaagat 2351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1236666 agccgctttggcagagatcacggagatggtggcacagctccacggtacgatgatcaagat 1236607 Query: 2352 ggagaatttccagaagctgcacgaactcaagaaagatttgattggcattgacaatcttgt 2411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1236606 ggagaatttccagaagctgcacgaactcaagaaagatttgattggcattgacaatcttgt 1236547 Query: 2412 ggttccgggaaggg 2425 |||||||||||||| Sbjct: 1236546 ggttccgggaaggg 1236533 Score = 240 bits (120), Expect = 4e-60 Identities = 127/128 (99%), Gaps = 1/128 (0%) Strand = Plus / Minus Query: 1 ccccgcgcgacgtcgcaggcgaagcagccccaggcaggacctcaaaaagcgacctgcaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1527366 ccccgcgcgacgtcgcaggcgaagcagccccaggcaggacctcaaaaagcgacctgcaga 1527307 Query: 61 gtccgagcccctgaccgcccg-cctgccgctcccggcttcgccgtgcacacgtctcccgc 119 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1527306 gtccgagcccctgaccgcccgccctgccgctcccggcttcgccgtgcacacgtctcccgc 1527247 Query: 120 tctccccg 127 |||||||| Sbjct: 1527246 tctccccg 1527239 Score = 234 bits (117), Expect = 3e-58 Identities = 117/117 (100%) Strand = Plus / Minus Query: 2663 ccagttctcggtccgagatggagaagtgggttgaggacatccagatggccattgacctgg 2722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232122 ccagttctcggtccgagatggagaagtgggttgaggacatccagatggccattgacctgg 1232063 Query: 2723 cggagaagagcagcagccccgcccctgagttcctggccagcagcccccctgacaaca 2779 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232062 cggagaagagcagcagccccgcccctgagttcctggccagcagcccccctgacaaca 1232006 Score = 230 bits (115), Expect = 5e-57 Identities = 115/115 (100%) Strand = Plus / Minus Query: 647 ctgagattggggattttgatgaagccttggacagagagcacttagcaaaaaataaataca 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285024 ctgagattggggattttgatgaagccttggacagagagcacttagcaaaaaataaataca 1284965 Query: 707 tacctcagcaagacgcactagaggacaaaatcgtggaatttcaccataaccacat 761 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284964 tacctcagcaagacgcactagaggacaaaatcgtggaatttcaccataaccacat 1284910 Score = 222 bits (111), Expect = 1e-54 Identities = 111/111 (100%) Strand = Plus / Minus Query: 2945 agaatcagttgtctggaaacctgctgaggaaattcaaaaacagcaacgggtggcagaagc 3004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1226139 agaatcagttgtctggaaacctgctgaggaaattcaaaaacagcaacgggtggcagaagc 1226080 Query: 3005 tgtgggtggtgttcacaaacttctgcctgttcttctacaaatcacaccagg 3055 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1226079 tgtgggtggtgttcacaaacttctgcctgttcttctacaaatcacaccagg 1226029 Score = 214 bits (107), Expect = 3e-52 Identities = 107/107 (100%) Strand = Plus / Minus Query: 322 caaagagctcctgggaaggtgctgctggatgcagtttgcaaccacctcaacctcgtggaa 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326094 caaagagctcctgggaaggtgctgctggatgcagtttgcaaccacctcaacctcgtggaa 1326035 Query: 382 ggtgactattttggcctcgagtttcctgatcacaaaaagatcacggt 428 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326034 ggtgactattttggcctcgagtttcctgatcacaaaaagatcacggt 1325988 Score = 200 bits (100), Expect = 5e-48 Identities = 100/100 (100%) Strand = Plus / Minus Query: 547 aggtacctgttcgcgctgcaggtgaagcaggacttggctcaaggcaggttgacgtgtaat 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1291935 aggtacctgttcgcgctgcaggtgaagcaggacttggctcaaggcaggttgacgtgtaat 1291876 Query: 607 gacaccagcgcagctctcttgatttcacacattgtgcaat 646 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1291875 gacaccagcgcagctctcttgatttcacacattgtgcaat 1291836 Score = 196 bits (98), Expect = 8e-47 Identities = 98/98 (100%) Strand = Plus / Minus Query: 908 agggtttcactaagatcaatgccttcaactgggccaaggtgcggaagctgagcttcaaga 967 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281373 agggtttcactaagatcaatgccttcaactgggccaaggtgcggaagctgagcttcaaga 1281314 Query: 968 ggaagcgctttctcatcaagctccggccagatgccaat 1005 |||||||||||||||||||||||||||||||||||||| Sbjct: 1281313 ggaagcgctttctcatcaagctccggccagatgccaat 1281276 Score = 184 bits (92), Expect = 3e-43 Identities = 92/92 (100%) Strand = Plus / Minus Query: 1751 agagattcccaactgataaagcgtacttcatagctaaggaagtgtctaccaccgagcgaa 1810 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1259012 agagattcccaactgataaagcgtacttcatagctaaggaagtgtctaccaccgagcgaa 1258953 Query: 1811 catatctgaaggatctcgaagttatcacttcg 1842 |||||||||||||||||||||||||||||||| Sbjct: 1258952 catatctgaaggatctcgaagttatcacttcg 1258921 Score = 182 bits (91), Expect = 1e-42 Identities = 91/91 (100%) Strand = Plus / Minus Query: 2493 gttcaacgacgtcctgctatacacgagccgggggctgacggcctccaatcagtttaaagt 2552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1233135 gttcaacgacgtcctgctatacacgagccgggggctgacggcctccaatcagtttaaagt 1233076 Query: 2553 ccacgggcagctcccgctctatggcatgacg 2583 ||||||||||||||||||||||||||||||| Sbjct: 1233075 ccacgggcagctcccgctctatggcatgacg 1233045 Score = 168 bits (84), Expect = 2e-38 Identities = 84/84 (100%) Strand = Plus / Minus Query: 2583 gattgaggagagcgaagacgagtggggggtgccccactgcctgaccctccggggccagcg 2642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232281 gattgaggagagcgaagacgagtggggggtgccccactgcctgaccctccggggccagcg 1232222 Query: 2643 gcagtccatcatcgtggccgccag 2666 |||||||||||||||||||||||| Sbjct: 1232221 gcagtccatcatcgtggccgccag 1232198 Score = 162 bits (81), Expect = 1e-36 Identities = 81/81 (100%) Strand = Plus / Minus Query: 470 ggccaaagcacgttgttgttaagtttgtggtgaaattctttccgcctgaccacacacaac 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1301641 ggccaaagcacgttgttgttaagtttgtggtgaaattctttccgcctgaccacacacaac 1301582 Query: 530 tccaagaagaactcacaaggt 550 ||||||||||||||||||||| Sbjct: 1301581 tccaagaagaactcacaaggt 1301561 Score = 156 bits (78), Expect = 9e-35 Identities = 78/78 (100%) Strand = Plus / Minus Query: 1237 aggaagcacagcaagattcattctatccggagccttgcttcacagcctacagaactgaat 1296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1276112 aggaagcacagcaagattcattctatccggagccttgcttcacagcctacagaactgaat 1276053 Query: 1297 tcggaagtgctggagcag 1314 |||||||||||||||||| Sbjct: 1276052 tcggaagtgctggagcag 1276035 Score = 150 bits (75), Expect = 5e-33 Identities = 75/75 (100%) Strand = Plus / Minus Query: 1165 ttcagtggtcggactcagaagcaggttctcgactatgttaaagaaggaggacataagaag 1224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1278947 ttcagtggtcggactcagaagcaggttctcgactatgttaaagaaggaggacataagaag 1278888 Query: 1225 gtgcagtttgaaagg 1239 ||||||||||||||| Sbjct: 1278887 gtgcagtttgaaagg 1278873 Score = 140 bits (70), Expect = 6e-30 Identities = 70/70 (100%) Strand = Plus / Minus Query: 2424 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggggctccagcagcgcat 2483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1233438 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggggctccagcagcgcat 1233379 Query: 2484 gttcttcctg 2493 |||||||||| Sbjct: 1233378 gttcttcctg 1233369 Score = 90.4 bits (45), Expect = 6e-15 Identities = 45/45 (100%) Strand = Plus / Minus Query: 426 ggtgtggctggatctcctaaaacccattgtgaaacagattagaag 470 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1304376 ggtgtggctggatctcctaaaacccattgtgaaacagattagaag 1304332 >CRA|GA_x54KRE2F1CS:1..13238 /chromosome=U /organism=Homo sapiens /order=1 /ga_uid=181000057882010 /len=13238 Length = 13238 Score = 482 bits (241), Expect = e-133 Identities = 241/241 (100%) Strand = Plus / Plus Query: 2053 aagcacctggcggctcacctgtggaagcacagcgaggccttggaggccctggagaatgga 2112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11455 aagcacctggcggctcacctgtggaagcacagcgaggccttggaggccctggagaatgga 11514 Query: 2113 atcaagagctcccggcggctggagaacttctgcagagactttgagctgcagaaggtgtgt 2172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11515 atcaagagctcccggcggctggagaacttctgcagagactttgagctgcagaaggtgtgt 11574 Query: 2173 tacctaccgctcaacaccttcctcctgcggccactgcaccggctcatgcactacaagcag 2232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11575 tacctaccgctcaacaccttcctcctgcggccactgcaccggctcatgcactacaagcag 11634 Query: 2233 gtcctggagcggctgtgcaaacaccacccgccgagccacgccgacttcagggactgccga 2292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11635 gtcctggagcggctgtgcaaacaccacccgccgagccacgccgacttcagggactgccga 11694 Query: 2293 g 2293 | Sbjct: 11695 g 11695 Score = 160 bits (80), Expect = 5e-36 Identities = 80/80 (100%) Strand = Plus / Plus Query: 1976 gggaaggccgctcaaatgcccaaatcagagattaccaaagaatcggcgatgtcatgctga 2035 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4986 gggaaggccgctcaaatgcccaaatcagagattaccaaagaatcggcgatgtcatgctga 5045 Query: 2036 agaacattcagggcatgaag 2055 |||||||||||||||||||| Sbjct: 5046 agaacattcagggcatgaag 5065 >CRA|GA_x54KRCCNGAU:1..14052 /chromosome=U /organism=Homo sapiens /order=1 /ga_uid=181000001503580 /len=14052 Length = 14052 Score = 482 bits (241), Expect = e-133 Identities = 241/241 (100%) Strand = Plus / Plus Query: 2053 aagcacctggcggctcacctgtggaagcacagcgaggccttggaggccctggagaatgga 2112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12269 aagcacctggcggctcacctgtggaagcacagcgaggccttggaggccctggagaatgga 12328 Query: 2113 atcaagagctcccggcggctggagaacttctgcagagactttgagctgcagaaggtgtgt 2172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12329 atcaagagctcccggcggctggagaacttctgcagagactttgagctgcagaaggtgtgt 12388 Query: 2173 tacctaccgctcaacaccttcctcctgcggccactgcaccggctcatgcactacaagcag 2232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12389 tacctaccgctcaacaccttcctcctgcggccactgcaccggctcatgcactacaagcag 12448 Query: 2233 gtcctggagcggctgtgcaaacaccacccgccgagccacgccgacttcagggactgccga 2292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12449 gtcctggagcggctgtgcaaacaccacccgccgagccacgccgacttcagggactgccga 12508 Query: 2293 g 2293 | Sbjct: 12509 g 12509 Score = 160 bits (80), Expect = 5e-36 Identities = 80/80 (100%) Strand = Plus / Plus Query: 1976 gggaaggccgctcaaatgcccaaatcagagattaccaaagaatcggcgatgtcatgctga 2035 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5800 gggaaggccgctcaaatgcccaaatcagagattaccaaagaatcggcgatgtcatgctga 5859 Query: 2036 agaacattcagggcatgaag 2055 |||||||||||||||||||| Sbjct: 5860 agaacattcagggcatgaag 5879 >CRA|GA_x54KRDAVJLM:1..1095 /chromosome=U /organism=Homo sapiens /order=1 /ga_uid=181000033192597 /len=1095 Length = 1095 Score = 126 bits (63), Expect = 9e-26 Identities = 69/70 (98%) Strand = Plus / Minus Query: 2424 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggggctccagcagcgcat 2483 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 146 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggagctccagcagcgcat 87 Query: 2484 gttcttcctg 2493 |||||||||| Sbjct: 86 gttcttcctg 77 >CRA|GA_x54KRDAVJLL:1..683 /chromosome=U /organism=Homo sapiens /order=1 /ga_uid=181000033192596 /len=683 Length = 683 Score = 126 bits (63), Expect = 9e-26 Identities = 69/70 (98%) Strand = Plus / Minus Query: 2424 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggggctccagcagcgcat 2483 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 244 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggagctccagcagcgcat 185 Query: 2484 gttcttcctg 2493 |||||||||| Sbjct: 184 gttcttcctg 175 >CRA|GA_x54KRDAVJLK:1..639 /chromosome=U /organism=Homo sapiens /order=1 /ga_uid=181000033192595 /len=639 Length = 639 Score = 126 bits (63), Expect = 9e-26 Identities = 69/70 (98%) Strand = Plus / Plus Query: 2424 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggggctccagcagcgcat 2483 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 84 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggagctccagcagcgcat 143 Query: 2484 gttcttcctg 2493 |||||||||| Sbjct: 144 gttcttcctg 153 >CRA|GA_x2HTBL2Y49L:1..2141229 /chromosome=6 /organism=Homo sapiens /order=1 /ga_uid=90000640151860 /len=2141229 Length = 2141229 Score = 126 bits (63), Expect = 9e-26 Identities = 69/70 (98%) Strand = Plus / Plus Query: 2424 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggggctccagcagcgcat 2483 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1729794 ggagttcatccgtctgggcagcctcagcaagctctcggggaaggagctccagcagcgcat 1729853 Query: 2484 gttcttcctg 2493 |||||||||| Sbjct: 1729854 gttcttcctg 1729863 Database: /work/gdisc2/pipeline_runs/latest_release/CHGD_assembly_la test.fasta Posted date: Jan 5, 2001 4:23 PM Number of letters in database: 3,281,761,131 Number of sequences in database: 479,986 Lambda K H 1.39 0.749 1.38 Gapped Lambda K H 1.39 0.749 1.38 Matrix: blastn matrix:1 -6 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5693455 Number of Sequences: 479986 Number of extensions: 5693455 Number of successful extensions: 34 Number of sequences better than 1.0e-10: 7 length of query: 3442 length of database: 3,000,000,000 effective HSP length: 20 effective length of query: 3422 effective length of database: 2,990,400,280 effective search space: 10233149758160 effective search space used: 10233149758160 T: 0 A: 0 X1: 6 (12.0 bits) X2: 10 (20.0 bits) S1: 12 (24.4 bits) S2: 39 (78.4 bits)