{"id":75,"date":"2007-12-19T15:03:26","date_gmt":"2007-12-19T23:03:26","guid":{"rendered":"http:\/\/hongyu.org\/wordpress\/?p=75"},"modified":"2008-09-11T15:31:42","modified_gmt":"2008-09-11T23:31:42","slug":"phylogenetic-tree-choosing-algorithm","status":"publish","type":"post","link":"https:\/\/www.hongyu.org\/wordpress\/?p=75","title":{"rendered":"Phylogenetic algorithm selection"},"content":{"rendered":"<p>See <a href=\"http:\/\/pga.lbl.gov\/Workshop\/April2002\/lectures\/Olken.pdf\">http:\/\/pga.lbl.gov\/Workshop\/April2002\/lectures\/Olken.pdf<\/a> for details, in brief:<\/p>\n<p>\u00e2\u20ac\u00a2 Continuous characters, lots of data, few computing resources ==&gt; Neighbor joining<br \/>\n\u00e2\u20ac\u00a2 Discrete characters, few mutations \/ homoplasy ==&gt; Maximum Parsimony<br \/>\n\u00e2\u20ac\u00a2 Discrete characters, limited sequence lengths, some homoplasy ==&gt; Maximum Likelihood Estimation<br \/>\n\u00e2\u20ac\u00a2 Discrete characters, many taxa ==&gt; Supertree<br \/>\n\u00e2\u20ac\u00a2 Complete genomes ==&gt; Whole genome phylogeny<\/p>\n","protected":false},"excerpt":{"rendered":"<p>See http:\/\/pga.lbl.gov\/Workshop\/April2002\/lectures\/Olken.pdf for details, in brief: \u00e2\u20ac\u00a2 Continuous characters, lots of data, few computing resources ==&gt; Neighbor joining \u00e2\u20ac\u00a2 Discrete characters, few mutations \/ homoplasy ==&gt; Maximum Parsimony \u00e2\u20ac\u00a2 Discrete characters, limited sequence lengths, some homoplasy ==&gt; Maximum Likelihood Estimation \u00e2\u20ac\u00a2 Discrete characters, many taxa ==&gt; Supertree \u00e2\u20ac\u00a2 Complete genomes ==&gt; Whole genome phylogeny<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[3],"tags":[],"_links":{"self":[{"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/75"}],"collection":[{"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=75"}],"version-history":[{"count":0,"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=\/wp\/v2\/posts\/75\/revisions"}],"wp:attachment":[{"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=75"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=75"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.hongyu.org\/wordpress\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=75"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}